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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2669554_2670273_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2669554 - 2670273
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCAGTAACA
Flanking Amino Acid:
RKPLPPSALESQGLTKHALR
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
59.3
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.6
84.6
23.3
Minor 5ss
29.1
-2.4
3.1
35.1
35.5
Minor BPS
57.5
0.23
2.3
76.47
40.7

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010760
2658073 - 2670323
12251