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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2670715_2670800_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2670715 - 2670800
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
CGTGCCCGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CGTGTTTTATCT
Flanking Amino Acid:
PFRLRYVPPRGDTPEHLGGS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
53.2
45.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
54.8
0.11
1.1
46.5
41.5
Minor 5ss
32.3
-2
2.9
31.8
42.1
Minor BPS
51.1
0.11
1.7
67.28
44.2

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301