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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2670919_2671004_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2670919 - 2671004
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGCG
5'SS Class:
major
3'SS Sequence:
TCTCCTCGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
TTCACCCTCACG
Flanking Amino Acid:
ITRACPLLAARVDDNDGEFL
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.6
41.5
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
67
0.38
1
61.3
40.1
Minor 5ss
23
-3.1
3.4
29.5
43.4
Minor BPS
48.2
-0.2
2.2
60.79
46.6

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301