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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2671809_2672388_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2671809 - 2672388
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TTGTATGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GTATGATTAATA
Flanking Amino Acid:
IRAAVYKRISGYPEKIQASF
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65
41.2
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
71.8
0.49
1.1
66.2
44.1
Minor 5ss
37.7
-1.4
3.1
40.4
45.8
Minor BPS
52.5
0.08
2
66.35
39.9

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301