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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2673574_2674747_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2673574 - 2674747
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
CATTGCTTATAC
Flanking Amino Acid:
YKAYELGMKLAHGFEILCSK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
75.9
0.58
1
69.6
40.2
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
48
-0.1
2.1
60.61
44.4

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301