About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2674874_2675446_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2674874 - 2675446
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTAG
5'SS Class:
major
3'SS Sequence:
TTGCATTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
CTTGCATTAAAT
Flanking Amino Acid:
NGLKEKDYFKGEMEGSAKYM
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65
37.1
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
62.7
0.29
1
59.2
40.7
Minor 5ss
30
-2.3
3.3
36.8
47.7
Minor BPS
59.8
0.38
1.9
78.39
43.5

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301