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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2676238_2676946_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2676238 - 2676946
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
GTGTGCACAAAT
Flanking Amino Acid:
REAACLPPEDDDSWLEISPD
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
43.3
-0.4
2.2
63.6
45.8

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301