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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26775526_26783398_R

Intron Information:

Intron Rank:
129456
Intron Class:
major
Intron Phase:
Intron Coordinates:
26775526 - 26783398
Intron Length:
7873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCCTCTCTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
79
0.72
1
69
38.9
Major PPT
69.9
0.45
0.9
65.5
35.1
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
49
-0.2
1.7
54.29
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022546
26774859 - 26783531
8673