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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2678496_2678626_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2678496 - 2678626
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
AAATAATAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTGTACTTACAC
Flanking Amino Acid:
SFTKALDRILGPDSEELDSD
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
52.5
0.06
1.1
45.4
43.9
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
48.8
-0.1
1.9
60.3
44.6

Associated Gene:

Gene:
ECD
Ensembl Gene ID:
ENSAPLG00000010059
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010498
2669445 - 2679745
10301