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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26788260_26830483_R

Intron Information:

Intron Rank:
129460
Intron Class:
major
Intron Phase:
Intron Coordinates:
26788260 - 26830483
Intron Length:
42224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.9
0.81
0.6
85.6
21.5
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031482
26774859 - 26832428
57570