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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2688628_2689178_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2688628 - 2689178
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACTCTCCTAATT
Flanking Amino Acid:
HALVGGQQTEISMNSLELEE
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.2
0.72
0.9
73.8
41.1
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
56.2
0.27
1.7
72.09
39

Associated Gene:

Gene:
NUDT13
Ensembl Gene ID:
ENSAPLG00000009992
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010414
2688433 - 2692699
4267