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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2689334_2689902_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2689334 - 2689902
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
TGGTTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTGTCCTCACCT
Flanking Amino Acid:
YTALSGFCDLGESVEEALRR
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.2
49
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
75.6
0.58
1
65.9
45.3
Minor 5ss
29.7
-2.3
3.2
30.3
42.8
Minor BPS
58
0.33
1.9
75.86
46.7

Associated Gene:

Gene:
NUDT13
Ensembl Gene ID:
ENSAPLG00000009992
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010414
2688433 - 2692699
4267