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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2691131_2691501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2691131 - 2691501
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGGATG
5'SS Class:
major
3'SS Sequence:
GTTTTTTAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAAGC
Flanking Amino Acid:
EHVPHFALDLGALEKSVIES
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
65.5
45.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.2
0.61
1
74.8
39
Minor 5ss
30.8
-2.2
3.3
39.5
46.1
Minor BPS
66.6
0.5
1.6
74.15
36.9

Associated Gene:

Gene:
NUDT13
Ensembl Gene ID:
ENSAPLG00000009992
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010414
2688433 - 2692699
4267