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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2691610_2692201_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2691610 - 2692201
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTTAC
U12 Branch Point Sequence:
TCCCTTACAGCT
Flanking Amino Acid:
KYLLPQLSAAEMKRILEKMK
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
56.6
0.16
1.1
48.9
36.2
Major PPT
74.7
0.56
0.9
73.3
37.2
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
40.1
-0.6
1.8
53.74
42

Associated Gene:

Gene:
NUDT13
Ensembl Gene ID:
ENSAPLG00000009992
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010414
2688433 - 2692699
4267