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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2692342_2692587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2692342 - 2692587
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGATCTTAAATT
Flanking Amino Acid:
RFHSTYVKKMRYLNELKEDD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.7
0.83
0.7
82.1
28.2
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
63.6
0.51
1.6
77.22
39.7

Associated Gene:

Gene:
NUDT13
Ensembl Gene ID:
ENSAPLG00000009992
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010414
2688433 - 2692699
4267