Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27009472_27010185_R

Intron Information:

Intron Rank:

134680

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

27009472 - 27010185

Intron Length:

714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAGGCATA

5'SS Class:

weak_major

3'SS Sequence:

TCTTCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAC

U12 Branch Point Sequence:

AGCTCTTCAGAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.1

0.26

1.2

62.2

43.9

Major BPS

64.2

0.35

60.7

37.6

Major PPT

91.2

0.93

0.6

84.1

30.8

Minor 5ss

44.5

-0.6

3.2

66.5

44.6

Minor BPS

44.8

-0.4

1.8

51.15

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019780

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031194

27008787 - 27010524

1738