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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27028170_27028337_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27028170 - 27028337
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAGA
5'SS Class:
major
3'SS Sequence:
TCATCACTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATCACT
Flanking Amino Acid:
YRHRQGTDLSSTTIPAVFEL
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
70.1
42
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
71.6
0.49
0.9
62.4
38.5
Minor 5ss
30.1
-2.3
2.7
34.4
41.1
Minor BPS
56.2
0.28
2
80.09
42.1

Associated Gene:

Gene:
GPAM
Ensembl Gene ID:
ENSAPLG00000001995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032124
27020513 - 27047637
27125