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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27028355_27029427_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27028355 - 27029427
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
ACLLLYRHRQGTDLSRLVED
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
GPAM
Ensembl Gene ID:
ENSAPLG00000001995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032124
27020513 - 27047637
27125
ENSAPLT00000002280
27020513 - 27067458
46946