Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27029499_27030377_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27029499 - 27030377

Intron Length:

879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TGTTTACTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

TTCAATTTAACT

Flanking Amino Acid:

IANLAEHILFTANKSCAVMS

Intron Amino Acid Position:

476

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

79.3

34.5

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

79.2

0.66

0.8

Minor 5ss

40.8

-1

3.4

63.8

41.6

Minor BPS

67.2

0.62

1.5

81.56

Associated Gene:

Gene:

GPAM

Ensembl Gene ID:

ENSAPLG00000001995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032124

27020513 - 27047637

27125

ENSAPLT00000002280

27020513 - 27067458

46946