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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27034325_27035045_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27034325 - 27035045
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AGATACTTATTT
Flanking Amino Acid:
DFLYRALLYVHIEELLRQQQ
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.6
0.73
0.9
81
35.7
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
53.5
0.19
1.8
69.41
41.2

Associated Gene:

Gene:
GPAM
Ensembl Gene ID:
ENSAPLG00000001995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032124
27020513 - 27047637
27125
ENSAPLT00000002280
27020513 - 27067458
46946