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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2704245_2705141_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2704245 - 2705141
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGACAT
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
CCTTGTCTAACT
Flanking Amino Acid:
YAHTDFFTSIGHMTDLINTE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
0.9
69.5
36.5
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
83.7
0.76
0.7
77.1
31.7
Minor 5ss
28.3
-2.5
3.1
36.2
41.7
Minor BPS
50
0.08
2.1
71.75
45.6

Associated Gene:

Gene:
P4HA1
Ensembl Gene ID:
ENSAPLG00000009284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039172
2704122 - 2730828
26707
ENSAPLT00000033777
2704122 - 2730828
26707
ENSAPLT00000009702
2704157 - 2734753
30597