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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27045491_27047506_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27045491 - 27047506
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGTTGCTGGATA
Flanking Amino Acid:
GRCKHSNEEWGECNSRPPLF
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.9
0.69
0.8
76.8
32
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
51.5
0.04
1.9
67.73
38.8

Associated Gene:

Gene:
GPAM
Ensembl Gene ID:
ENSAPLG00000001995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032124
27020513 - 27047637
27125
ENSAPLT00000002280
27020513 - 27067458
46946