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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27065336_27067381_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27065336 - 27067381
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTCTCTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.5
0.64
0.9
74.7
39.3
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
58.8
0.36
1.8
76.4
40.9

Associated Gene:

Gene:
GPAM
Ensembl Gene ID:
ENSAPLG00000001995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002280
27020513 - 27067458
46946