About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27083936_27085746_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27083936 - 27085746
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
GGTCACTCAAGC
Flanking Amino Acid:
LAGPCIPNKADVILVYCYPR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
45.4
-0.3
2
55.34
41.9

Associated Gene:

Gene:
TECTB
Ensembl Gene ID:
ENSAPLG00000001593
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001831
27083847 - 27092933
9087