About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27085938_27086421_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27085938 - 27086421
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTACCACCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCTGCCTTACCA
Flanking Amino Acid:
NKSYCGTQSEFKNPVYHFYN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
74
0.54
0.9
66.4
34.5
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
65.8
0.49
1.8
74.7
43.3

Associated Gene:

Gene:
TECTB
Ensembl Gene ID:
ENSAPLG00000001593
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001831
27083847 - 27092933
9087