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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27086565_27086650_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27086565 - 27086650
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTATATCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTTTGTTATAT
Flanking Amino Acid:
YLVNQAAFDQRVATVHVKNG
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
68
0.41
0.9
59.4
41.8
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
48.1
-0
2.3
73.45
43.3

Associated Gene:

Gene:
TECTB
Ensembl Gene ID:
ENSAPLG00000001593
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001831
27083847 - 27092933
9087