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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27088465_27089042_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27088465 - 27089042
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
ACACACAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGCTTCTTCACA
Flanking Amino Acid:
YQIHWPLITKGCATDNSILV
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
40.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
52.3
0.05
1
43.7
35.4
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
62.6
0.39
1.8
71.26
41.2

Associated Gene:

Gene:
TECTB
Ensembl Gene ID:
ENSAPLG00000001593
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001831
27083847 - 27092933
9087