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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27089206_27091143_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27089206 - 27091143
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGATCTCTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TCTCTCTGATCT
Flanking Amino Acid:
CDSEKFSCPVTCDKRKQRME
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.8
41.8
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
54.9
0.11
1.7
65.9
40.8
Minor 5ss
33.5
-1.9
3.4
45.9
43.3
Minor BPS
54.2
0.21
1.7
73.9
42.8

Associated Gene:

Gene:
TECTB
Ensembl Gene ID:
ENSAPLG00000001593
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001831
27083847 - 27092933
9087