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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27092235_27092714_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27092235 - 27092714
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTAGTTTTCATT
Flanking Amino Acid:
KGLSRFYTLSDIIFHLLFTI
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
50.4
0.09
1.8
71.31
40.8

Associated Gene:

Gene:
TECTB
Ensembl Gene ID:
ENSAPLG00000001593
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001831
27083847 - 27092933
9087