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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2711167_2713740_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2711167 - 2713740
Intron Length:
2574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGTTTCAAAT
Flanking Amino Acid:
TDTLSRGNLPGVKHKSFLTA
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
70.7
0.47
1
63.5
41.1
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
55.5
0.25
1.7
76.7
40.1

Associated Gene:

Gene:
P4HA1
Ensembl Gene ID:
ENSAPLG00000009284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009702
2704157 - 2734753
30597
ENSAPLT00000039172
2704122 - 2730828
26707
ENSAPLT00000033777
2704122 - 2730828
26707