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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27122355_27127812_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27122355 - 27127812
Intron Length:
5458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCCTCTCTGATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
79
0.72
1
69
38.9
Major PPT
86.3
0.82
0.8
83.9
31.1
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
49
-0.2
1.7
54.29
41.8

Associated Gene:

Gene:
ACSL5
Ensembl Gene ID:
ENSAPLG00000014661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034653
27122179 - 27142200
20022