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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27122355_27131327_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27122355 - 27131327
Intron Length:
8973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ACCTACTAAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
52
0.04
1.9
61.29
44

Associated Gene:

Gene:
ACSL5
Ensembl Gene ID:
ENSAPLG00000014661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015355
27122179 - 27142200
20022