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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27132202_27132858_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27132202 - 27132858
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAACT
Flanking Amino Acid:
EVFQRGLHASGNGNCLGYRK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.6
0.42
0.9
67.8
33
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
75.4
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
ACSL5
Ensembl Gene ID:
ENSAPLG00000014661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034653
27122179 - 27142200
20022
ENSAPLT00000015355
27122179 - 27142200
20022