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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27136877_27137323_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27136877 - 27137323
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GGTTGATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTATCTTTGACT
Flanking Amino Acid:
LAHMFERVVQTVIYSCGAKV
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
70.8
0.47
1
66.7
44.2
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
82.3
1.1
1
91.88
30.6

Associated Gene:

Gene:
ACSL5
Ensembl Gene ID:
ENSAPLG00000014661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034653
27122179 - 27142200
20022
ENSAPLT00000015355
27122179 - 27142200
20022