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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27137459_27137941_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27137459 - 27137941
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
PRLLNRIYDKIQSGANTPVK
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
89.7
0.89
0.6
84.1
24.1
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
ACSL5
Ensembl Gene ID:
ENSAPLG00000014661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034653
27122179 - 27142200
20022
ENSAPLT00000015355
27122179 - 27142200
20022