About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27141605_27142059_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27141605 - 27142059
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
KEAGLKSFEQVKDLYIHPEL
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
ACSL5
Ensembl Gene ID:
ENSAPLG00000014661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034653
27122179 - 27142200
20022
ENSAPLT00000015355
27122179 - 27142200
20022