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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27147485_27149189_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27147485 - 27149189
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
TTCATATCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATATCT
Flanking Amino Acid:
GEKILDSAADGGIRERGWFP
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.5
34.7
Major BPS
100
1.24
0.5
100
0
Major PPT
69.3
0.43
1.1
72.5
36.9
Minor 5ss
40
-1.1
2.8
48.8
41.7
Minor BPS
58.1
0.33
1.9
80.25
41.8

Associated Gene:

Gene:
ZDHHC6
Ensembl Gene ID:
ENSAPLG00000014549
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034021
27147381 - 27157930
10550