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Intron Name: Anas_platyrhynchos_platyrhynchos_6_27158994_27166083_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27158994 - 27166083

Intron Length:

7090

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCCG

5'SS Class:

strong_major

3'SS Sequence:

CATTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

GTATCTTCACCA

Flanking Amino Acid:

RIGKVPKLLGDEKKQMVANV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

62.3

43.9

Major BPS

77.5

0.68

79.6

Major PPT

86.7

0.83

0.7

84.4

Minor 5ss

32.7

-2

39.3

46.1

Minor BPS

52.2

0.06

1.8

65.26

Associated Gene:

Gene:

VTI1A

Ensembl Gene ID:

ENSAPLG00000014465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047111

27157951 - 27422926

264976

ENSAPLT00000015081

27158900 - 27422926

264027