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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27171374_27212668_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27171374 - 27212668
Intron Length:
41295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TACTTCCTAACC
Flanking Amino Acid:
QEMGKLEADFKRSRIAYSDE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
76.6
34.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
42.2
-0.9
3
58.8
40.3
Minor BPS
63.5
0.4
1.7
71.9
39.1

Associated Gene:

Gene:
VTI1A
Ensembl Gene ID:
ENSAPLG00000014465
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047111
27157951 - 27422926
264976
ENSAPLT00000015081
27158900 - 27422926
264027