About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2718321_2727229_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2718321 - 2727229
Intron Length:
8909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATA
Flanking Amino Acid:
LETAHYRISKSAWLSGYESP
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.6
0.55
0.9
74.8
35
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
69.8
0.62
1.5
78.59
31.1

Associated Gene:

Gene:
P4HA1
Ensembl Gene ID:
ENSAPLG00000009284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039172
2704122 - 2730828
26707