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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27212747_27219093_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27212747 - 27219093
Intron Length:
6347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCATGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTTTTTATCT
Flanking Amino Acid:
GDDGNSSENQLIKLREERAH
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76
0.59
1
69.1
41.5
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
61.4
0.44
1.6
74.38
43.4

Associated Gene:

Gene:
VTI1A
Ensembl Gene ID:
ENSAPLG00000014465
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015081
27158900 - 27422926
264027