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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27219115_27223998_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27219115 - 27223998
Intron Length:
4884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TTTTCTTTTTCA
Flanking Amino Acid:
ENQLIKLREERAHLLDNTER
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
47
-0.2
3.6
78.96
37.6

Associated Gene:

Gene:
VTI1A
Ensembl Gene ID:
ENSAPLG00000014465
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015081
27158900 - 27422926
264027