Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27224084_27319998_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27224084 - 27319998

Intron Length:

95915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTAATGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTCATGATT

Flanking Amino Acid:

EAGYQIAVETEQIGQEMLEN

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

84.9

32.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.1

0.81

0.8

82.5

32.8

Minor 5ss

39.9

-1.1

3.2

59.5

44.6

Minor BPS

68.1

0.65

1.5

87.5

31.3

Associated Gene:

Gene:

VTI1A

Ensembl Gene ID:

ENSAPLG00000014465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047111

27157951 - 27422926

264976

ENSAPLT00000015081

27158900 - 27422926

264027