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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_272240_286086_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
272240 - 286086
Intron Length:
13847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTC
Flanking Amino Acid:
ISIDNKKRNIESPEIGPSVV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
66.8
0.51
1.5
73.5
38.4

Associated Gene:

Gene:
RNLS
Ensembl Gene ID:
ENSAPLG00000015666
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016323
215255 - 291441
76187
ENSAPLT00000042201
215255 - 291640
76386
ENSAPLT00000041320
215255 - 295535
80281
ENSAPLT00000019703
215255 - 288812
73558