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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2727330_2728619_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2727330 - 2728619
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTCCTTTCACT
Flanking Amino Acid:
LDVSTAEELQVANYGVGGQY
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75.7
0.58
0.8
69.9
29.5
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
64.8
0.55
1.8
80.9
41.2

Associated Gene:

Gene:
P4HA1
Ensembl Gene ID:
ENSAPLG00000009284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039172
2704122 - 2730828
26707
ENSAPLT00000033777
2704122 - 2730828
26707
ENSAPLT00000009702
2704157 - 2734753
30597