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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2728674_2730455_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2728674 - 2730455
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGCTTATTAAAC
Flanking Amino Acid:
QYEPHFDFGRKDEPDAFKEL
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.1
0.79
0.7
80
30.8
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
55.6
0.16
1.7
65.31
39.8

Associated Gene:

Gene:
P4HA1
Ensembl Gene ID:
ENSAPLG00000009284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039172
2704122 - 2730828
26707
ENSAPLT00000033777
2704122 - 2730828
26707
ENSAPLT00000009702
2704157 - 2734753
30597