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Intron Name: Anas_platyrhynchos_platyrhynchos_6_27320070_27324679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27320070 - 27324679

Intron Length:

4610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGATTTTAATG

Flanking Amino Acid:

REKIQRARERLRETDANLGK

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

78.8

38.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.2

0.77

0.7

77.1

31.6

Minor 5ss

43.4

-0.7

2.8

46.2

Minor BPS

62.5

0.25

1.4

62.98

39.9

Associated Gene:

Gene:

VTI1A

Ensembl Gene ID:

ENSAPLG00000014465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015081

27158900 - 27422926

264027

ENSAPLT00000047111

27157951 - 27422926

264976