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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2746291_2747579_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2746291 - 2747579
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCCAA
5'SS Class:
major
3'SS Sequence:
CTTCCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
TTGAGTCCAAGG
Flanking Amino Acid:
GCSSYFLGLKLDLGIPAMTK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
56.2
44.7
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
41.7
-0.9
3.2
56.2
48
Minor BPS
35.1
-1.2
2.2
40.51
43.7

Associated Gene:

Gene:
PLA2G12B
Ensembl Gene ID:
ENSAPLG00000009178
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033783
2741029 - 2749144
8116