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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27469118_27470189_F

Intron Information:

Intron Rank:
127788
Intron Class:
major
Intron Phase:
Intron Coordinates:
27469118 - 27470189
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTG
5'SS Class:
major
3'SS Sequence:
TATTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
69.9
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.8
0.76
0.8
82.3
34
Minor 5ss
39.6
-1.2
3.5
55.7
48.5
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018887
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041242
27457024 - 27477946
20923