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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27470306_27477020_F

Intron Information:

Intron Rank:
127789
Intron Class:
major
Intron Phase:
Intron Coordinates:
27470306 - 27477020
Intron Length:
6715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.4
0.73
0.9
76.5
37
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018887
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041242
27457024 - 27477946
20923